But when the application starts, the UI of ImageJ is loaded separately and shown as well. I need to count the number of particles found in the following image: But before analyzing it using Analyze > Analyze Particles, I have to perform some pre-processing tasks on it like Subtract Background or converting it to binary. ImageJ has comprehensive particle analysis algorithms which can be used effectively to count various biological particles. I created a simple Maven-based JavaFx application in Netbeans, and added only ImageJ ij = new ImageJ() to my code.
Count particles imagej download#
Is it fine if I download to work with ImageJ2 API? What about testing its functionality before using the API? Should I use Fiji instead of ImageJ?ĭear been working on another project and just got the chance to get back to this… Currently I am using the libraries shipped with ImageJ 1.49. Do you think I can use it for my purpose?Īnd thank you for pointing out ImageJ2 APIs. I also came across Cell Profiler which seems very promising. That’s all the features I think I need to use of ImageJ library behind the scenes in the application I am developing. I may also need to use some filters from “Plugins > Fast Morphology > Morphological Filters”. I am trying to count the number of white dots in that scalp picture using a combination of several methods and filters including: “Subtract Background”, “FFT > Bandpass Filter” (to correct uneven illumination), “Adjust > Threshold”, Posterizing (which seems not to be available in ImageJ), “Binary > Fill Holes”, “Filters > Median”, “Process > Binary > Erode, Dilate, Open, Close, Watershed”, “Analyze > Analyze Particles” and finally use the “ROI Manager” to show the found dots and count them. I may ask specifically about this on a separate question, but that’s all I am trying to achieve. 1.After a size filter is applied to the original image A, we get the labeling image B.
Count particles imagej software#
I am going to develop a software for a hair transplant company which allows them count the number of hairs they transplant for each patient. Thank you for your prompt reply I am specifically trying to deal with the problem I’ve already described here on StackOverflow.
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